MassDash

Welcome to MassDash Documentation! MassDash is a visualization and data exploration platform for Data-Independent Acquisition mass spectrometry data.

Key Features Include:

• Chromatogram Visualization - Easily view and analyze chromatograms for an in-depth examination of peptide precursors of interest.

• 2D and 3D Visualizations - Visualization of ion mobility enhacanced mass spectrometry and other 2D and 3D plots.

• On the fly parameter optimization - Adjust peak picking parameters on the fly or experiment with novel deep learning based peak picking approaches.

• Algorithm testing - Develop and fine-tune custom algorithms by interfacing with MassDash’s various data analysis algorithms and workflows.

• Usage Flexibility - User-friendly web based dashboard for quick visualizations, advanced python package for more complex applications

Contribute

• Issues Tracker

• Source Code

Support

If you are having issues or would like to propose a new feature, please use the issues tracker.

License

This project is licensed under the BSD 3-Clause license.

Citation

If MassDash was usefull in your research please cite the following:

Sing JC, Charkow J, AlHigaylan M, Horecka I, Xu L, Röst HL. MassDash: A Web-Based Dashboard for Data-Independent Acquisition Mass Spectrometry Visualization. J Proteome Res. 2024 Jun 7;23(6):2306-2314. doi: 10.1021/acs.jproteome.4c00026. Epub 2024 Apr 29.

Please Click below for More Information:

• Installation
• GUI
• Python Interface
• API
• Plotting Gallery
• Testing