MassDash

Welcome to MassDash Documentation! MassDash is a visualization and data exploration platform for Data-Independent Acquisition mass spectrometry data.

Key Features Include:

• Chromatogram Visualization - Easily view and analyze chromatograms for an in-depth examination of peptide precursors of interest.

• 2D and 3D Visualizations - Visualization of ion mobility enhacanced mass spectrometry and other 2D and 3D plots.

• On the fly parameter optimization - Adjust peak picking parameters on the fly or experiment with novel deep learning based peak picking approaches.

• Algorithm testing - Develop and fine-tune custom algorithms by interfacing with MassDash’s various data analysis algorithms and workflows.

• Usage Flexibility - User-friendly web based dashboard for quick visualizations, advanced python package for more complex applications

Contribute

• Issues Tracker

• Source Code

Support

If you are having issues or would like to propose a new feature, please use the issues tracker.

License

This project is licensed under the BSD 3-Clause license.

Citation

If MassDash was usefull in your research please cite the following:

Sing, J. C., Charkow, J., AlHigaylan, M., Horecka, I., Xu, L., & Roest, H. L. (2024). MassDash: A Web-based Dashboard for Targeted Mass Spectrometry Visualization (p. 2024.01.15.575772). bioRxiv. https://doi.org/10.1101/2024.01.15.575772

Please Click below for More Information:

• Installation
• GUI
• Python Interface
• API
• Plotting Gallery
• Testing